PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015021-PA
Common NameOsI_16036
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 29466.2 Da    PI: 9.3218
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015021-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.83.9e-2568116250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                       rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs++gk+ye +
  BGIOSGA015021-PA  68 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVFSPHGKIYELA 116
                       8*********************************************965 PP

2K-box59.21.7e-20138232598
             K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       + +s+e++  +  qq++  L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le  +++iRs+K++++ ++ie l++ke  l+ +n  L++
  BGIOSGA015021-PA 138 QAESNEQNIPQVIQQDVLLLRQEVDLLQNSLRYMYGErDISHMNLGELQSLESNLEVWVNNIRSTKMQIMSREIEMLKNKEGILKAANDILQE 230
                       4555677778999***********************978****************************************************99 PP

             K-box  97 kl 98 
                       ++
  BGIOSGA015021-PA 231 RI 232
                       87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-3559118IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.2459119IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-2859135IPR002100Transcription factor, MADS-box
CDDcd002655.96E-3860133No hitNo description
PRINTSPR004046.3E-266181IPR002100Transcription factor, MADS-box
PROSITE patternPS00350061115IPR002100Transcription factor, MADS-box
PfamPF003197.4E-2468114IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-268196IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-2696117IPR002100Transcription factor, MADS-box
PfamPF014862.0E-23141232IPR002487Transcription factor, K-box
PROSITE profilePS5129713.227147239IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAGLPKLFPV PPKATIKTPP LLRQIQAVIS LKSSGRSKGL AATATASEAS SNYDSVGDMA  60
RGKVQMRRIE NPVHRQVTFC KRRMGLLKKA KELSVLCDAD IGVIVFSPHG KIYELATNGN  120
MQGLIERYKN KSNLPEAQAE SNEQNIPQVI QQDVLLLRQE VDLLQNSLRY MYGERDISHM  180
NLGELQSLES NLEVWVNNIR STKMQIMSRE IEMLKNKEGI LKAANDILQE RIIAQTSIMD  240
VGCNMMIPQV PFQLTTESNY YF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288322.11e-115MADS-box transcription factor 26-like
SwissprotA2YQK93e-78MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G83e-78MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA2XTV60.0A2XTV6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA015021-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-57AGAMOUS-like 12